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烟草转录因子bHLH93基因的克隆及表达分析

Cloning and Expression of Transcription Factor Gene bHLH93 from Nicotiana tabacum

  • 摘要: 碱性/螺旋-环-螺旋(basic/helix-loop-helix,bHLH)转录因子是一类广泛存在于真核生物体内的重要转录因子,能够参与调控植物体多种生理途径。为了明确bHLH转录因子在烟草中的功能和调控机制,通过同源克隆技术从烟草中克隆到一个bHLH转录因子基因(NtbHLH93),并结合生物信息学和基因表达模式分析进一步预测其生物学功能。结果表明:NtbHLH93 cDNA序列长1 254 bp,包含一个长度为1 047 bp的开放阅读框,编码349个氨基酸。NtbHLH93属于疏水性蛋白,其二级结构中的主要结构元件是α-螺旋和无规则卷曲,三级结构中具有bHLH家族典型的螺旋-环-螺旋结构特征。NtbHLH93基因表达具有明显的组织特异性,主要在烟草不同生育期侧根和盛花期子房组织中高表达,这与植物甾醇集中在生长分裂旺盛组织中合成的特征相吻合。

     

    Abstract: Basic/helix-loop-helix(bHLH) is an important transcription factor commonly existed in eukaryotes, it participates in the regulation of many physiological pathways. In order to clarify its function and regulation mechanism in tobacco, a bHLH gene, NtbHLH93, was cloned from Nicotiana tabacum by homologous cloning technology, and its biological function was predicted by bioinformatics combining with gene expression pattern analysis. The results showed that the cDNA sequence of NtbHLH93 was 1254 bp in length with an open reading frame(ORF) of 1047 bp and encoding 349 amino acids. NtbHLH93 was a hydrophobic protein, the main elements in its secondary structure were α-helix and random coil, and its tertiary structure featured helix-loop-helix structure typical of bHLH family. The gene expression of NtbHLH93 was obviously tissue-specific, highly expressed in lateral roots at different growing stages and in the ovary at flowering stage, which was consistent with the feature that the synthesis of plantsterol concentrated in meristematic tissues.

     

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