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普通烟草DHQ-SDH基因家族分析

Analysis of DHQ-SDH gene family in Nicotiana tabacum

  • 摘要: 为明确DHQ-SDH基因在普通烟草中的功能,用拟南芥DHQ-SDH基因检索烟草基因组数据库,获得普通烟草DHQ-SDHs基因。利用生物信息学分析了NtDHQ-SDHs的基因结构、蛋白质特征、启动子顺式作用元件和基因进化,用qPCR检测了NtDHQ-SDHs的组织特异性表达。结果表明:普通烟草中有8个DHQ-SDHs基因。NtDHQ-SDHs的编码序列在1 248~1 608 bp之间,编码415~535个氨基酸,蛋白质分子量为45.13~58.22 kD,均为稳定蛋白。NtDHQ-SDHs的外显子和内含子数量相对保守,均含有8~10个外显子和7~9个内含子。基序组成和进化分析发现,8个NtDHQ-SDHs被分为2个亚家族,分别来源于普通烟草的两个祖先种(林烟草和绒毛状烟草)。NtDHQ-SDHs在普通烟草根、茎、叶和顶芽中都有表达。

     

    Abstract: To clarify the functions of 3-dehydroquinate dehydratase and shikimate dehydrogenase(DHQ-SDH) genes in Nicotiana tabacum, AtDHQ-SDHs sequences were used to blast in China Tobacco Genome Database and NtDHQ-SDHs were obtained. Gene structure, protein characteristics, cis-regulatory elements and phylogenetic relationships were analyzed by bioinformatics software. Relative expression levels of NtDHQ-SDHs in different tissues of cv. Honghuadajinyuan were detected by qPCR. The results showed that eight NtDHQ-SDHs were identified. The coding region sequences of eight NtDHQ-SDHs were 1 248-1 608 bp in lengths and encoded 415-535 amino acids. The molecular weights of eight NtDHQ-SDHs were 45.13-58.22 kD and the predicted NtDHQ-SDHs were stable proteins. The number of exons and introns in NtDHQ-SDHs were relatively conserved, including 8-10 exons and 7-9 introns. Motif composition and phylogenetic analysis indicated that eight NtDHQ-SDHs were divided into two subfamilies, deriving from N. sylvestris and N. tomentosiformis, respectively. NtDHQ-SDHs were expressed in roots, stems, leaves and terminal buds.

     

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