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烟草miRNA169基因家族及启动子的生物信息学分析

Bioinformatic analysis of miRNA169 gene family and their promoters

  • 摘要: miRNA169是介导植物低温早花的关键因子。为了明确低温诱导烟草miRNA169基因家族表达的调控机制,培育耐低温抗早花的烟草新品种,对miRBase数据库中烟草miRNA169基因数据进行了分析,并对该基因家族及其启动子的结构和功能进行了预测。结果表明:在烟草基因组中共有19个miRNA169基因,分布在1号、8号和9号染色体上,同一染色体上的miRNA169分布集中。除pre-miRNA169t外,其他pre-miRNA169均具有很高的同源性。同时,在所有烟草miRNA169的启动子上均发现低温胁迫应答元件LTR,以及参与低温应答的激素脱落酸(ABA)和茉莉酸(JA)的应答元件。因此,推测烟草miRNA169对低温胁迫的响应过程可能是LTR、ABA和JA途径三者共同作用的结果。

     

    Abstract: miRNA169 is a key factor involved in early flowering at low temperatures. In order to understand the expression and regulation mechanism of miRNA169 gene family in tobacco at low temperatures and to breed new tobacco varieties with resistance to low temperatures and early flowering, tobacco miRNA169 data in miRBase were analyzed. The structure and function of miRNA169 and their promoters in tobacco were predicted. The results showed that 19 miRNA169 genes were identified in tobacco genomes. They were distributed on chr01, chr08 and chr09 chromosomes. miRNA169 was found to cluster together in one chromosome. Except for pre-miRNA169t, the other pre-miRNA169 had high homology. LTR elements, corresponding to ABA and JA and involved in low temperature stress, were found on all promoters of miRNA169 in tobacco. Therefore, it was speculated that the response process of miRNA169 to low temperature stress might be the result of the interaction of LTR, ABA and JA pathways in tobacco.

     

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