本平台为互联网非涉密平台,严禁处理、传输国家秘密或工作秘密

蠋蝽病毒Arma chinensis virus-1基因组克隆及序列分析

Cloning and sequence analysis of Arma chinensis virus-1 genome

  • 摘要: 为明确天敌昆虫蠋蝽病原物的基因组结构,利用高通量测序技术,在蠋蝽体内发现了一种新的正义单链RNA病毒,并将其命名为Arma chinensis virus-1 (AcV-1)。利用PCR和RACE扩增获得了含有完整读码框的AcV-1基因组序列,除Poly(A)外,其基因组长度为9 192 nt,包含2个开放阅读框(Open reading frames, ORFs)。ORF1长5 316 nt,编码一个含1 771个氨基酸的非结构蛋白,包含3个保守结构域,分别是依赖RNA的RNA聚合酶、蛋白酶和RNA解旋酶;ORF2长2 529 nt,编码一个含842个氨基酸的结构蛋白。AcV-1基因组序列与蟋蟀麻痹病毒(Cricket paralysis virus, CrPV,GenBank: KP974707.1)的相似性(89.40%)最高。根据序列同源性、基因组结构和聚类分析表明,AcV-1是蟋蟀麻痹病毒属(Cripavirus)的一个新成员。AcV-1在供试蠋蝽样本中侵染率为37.67%。

     

    Abstract: In order to clarify the genome structure of pathogen for natural enemy insect Arma chinensis, a novel single-stranded RNA virus was detected in Arma chinensis through high-throughput sequencing and was named as Arma chinensis virus-1 (AcV-1). The genome sequence of AcV-1 with two complete open reading frames (ORFs) amplified by PCR and RACE was 9 192 nt in length excluding the poly(A) tail. The predicted ORF1 was 5 316 nt in length, encoded a non-structural protein consisting of 1 771 amino acids and contained 3 conserved domains including RNA-dependent RNA polymerase, peptidase and RNA helicase. The predicted ORF2 was 2 529 nt in length and encoded structural proteins consisting of 842 amino acids. The similarity of genome sequence between AcV-1 and Cricket paralysis virus (GenBank: KP974707.1) was the highest (89.40%). Sequence homology, genome structure and phylogenetic analysis indicated that AcV-1 was a novel member of genus Cripavirus. The infection rate of AcV-1 in tested samples of Arma chinensis was 37.67%.

     

/

返回文章
返回