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普通烟草GATA转录因子家族鉴定及基因表达分析

Identification and gene expression analysis of GATA transcription factor family in Nicotiana tabacum

  • 摘要: GATA转录因子在调控植物的生长发育和逆境胁迫应答等过程中具有重要作用。为了明确烟草中GATA基因的结构与功能,基于同源搜索和结构域鉴定的方法从普通烟草基因组中鉴定出57个GATA基因家族成员,分别命名为NtGATA1~NtGATA57。基因结构、保守结构域和系统进化的生物信息学分析表明:烟草GATA基因家族成员可分为4个亚族,且同一亚族成员核心结构域氨基酸序列组成非常保守,各基因成员的外显子数目在1~17之间。转录组数据分析表明:大多数NtGATA基因在烟叶衰老的不同时期均有表达,而且不同家族成员的表达模式存在差异;实时荧光定量PCR分析发现:10个NtGATA基因对冷、盐和干旱等非生物胁迫存在不同程度的响应。说明烟草GATA基因家族成员在烟叶成熟衰老及逆境响应过程中可能发挥了重要作用。

     

    Abstract: GATA transcription factors play important roles in regulating growth, development and various stress responses of plants. To clarify the structure and function of GATA genes in tobacco, a total of 57 GATA gene family members were identified from the genome of Nicotiana tabacum using homology searching and domain identification, and these genes were named as NtGATA1-NtGATA57. Bioinformatics analyses of gene structure, conservative motifs and phylogeny showed that these genes with variable number of exons (1-17) could be classified into 4 subgroups. Within each subgroup, the amino acid sequences of core domains of each gene were very conservative. Transcriptomics data analysis indicated that most NtGATA genes expressed at different stages of leaf senescence, and different members of NtGATAs had different expression patterns. Real-time quantitative PCR found that 10 selected NtGATA genes had different response degrees to various abiotic stresses, such as cold, salt and drought stresses, which suggested that GATA gene family members might play important roles in tobacco leaf ripening, senescence and stress responding.

     

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