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烟草生长素受体基因家族鉴定及表达分析

Identification and expression analysis of auxin receptor gene family in Nicotiana tabacum

  • 摘要: 为明确烟草TIR1/AFBs家族基因对生长素类除草剂的抗性, 阐明二氯喹啉酸药害的机理, 对烟草生长素受体基因家族进行鉴定, 并对基因表达模式进行分析。结果表明, 普通烟草存在10个NtTIR1/AFBs基因。亚细胞定位分析显示, 有5个NtTIR1/AFBs定位在细胞核, 3个定位在细胞质, 2个定位在叶绿体。进化分析表明, NtTIR1/AFBs进化分为4类, 拟南芥的AtTIR1/AFBs分为3类。蛋白结构域分析显示, NtTIR1/AFBs主要含有F-box和LRR保守结构域。在结构域的数量上, NtTIR1/AFBs和AtTIR1/AFBs存在差异。MicroRNA靶点分析发现, 4个NtTIR1/AFBs含有潜在的miRNA靶点, 其中20083和20090基因均含有8个miRNA靶点。组织表达分析表明, 20081、20082、20088和20091 4个基因在烟草各组织中的表达量相对较高。二氯喹啉酸处理后基因表达分析显示, 20085和20086基因在烟草根系中上调表达幅度较大, 20082基因在烟草叶片中上调幅度最大, 而20081和20090基因在烟草叶片中下调幅度较大。

     

    Abstract: To elucidate the resistance of NtTIR1/AFBs family genes to auxin herbicides and the mechanism of quinclorac phytotoxicity in tobacco, the tobacco auxin receptor gene family was identified and their gene expression patterns were analyzed. The results showed that there were ten NtTIR1/AFBs genes in Nicotiana tabacum. Subcellular localization analysis showed that five NtTIR1/AFBs localize in the nucleus, three in the cytoplasm, and two in the chloroplasts. Phylogenetic analysis revealed that NtTIR1/AFBs were evolved into four classes, while AtTIR1/AFBs in Arabidopsis thaliana into three classes. Protein domain analysis revealed the presence of conserved F-box and LRR domains predominantly in NtTIR1/AFBs. Furthermore, there were differences in the number of domains between NtTIR1/AFBs and AtTIR1/AFBs. MicroRNA target analysis identified putative miRNA binding sites within four NtTIR1/AFBs genes, with 20083 and 20090 harboring eight miRNA target sites each. Tissue expression analysis revealed that the expressions of 20081, 20082, 20088 and 20091 were relatively high in all tissues. Notably, gene expression analysis after quinclorac treatment showed that the expressions of 20085 and 20086 were highly up-regulated in tobacco roots. 20082 had the highest up-regulated expression fold in tobacco leaves, while 20081 and 20090 had the highest down-regulated expression fold in tobacco leaves.

     

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