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普通烟草长叶柄突变基因的图位克隆与候选基因分析

Map-based cloning and candidate analysis of mutant genes controlling long petiole in Nicotiana tabacum

  • 摘要: 为深入了解叶极性建成的分子机制,对经EMS诱变获得的2个普通烟草长叶柄突变体M48和M50进行表型分析,采用图位克隆和比较基因组学策略对突变基因进行分离,并对候选基因进行生物信息学分析。结果表明,突变体M48和M50的长叶柄是由于叶片自基部向顶部不同程度的退化导致叶中脉裸露形成的;M48突变基因Nta14g05160.1M50突变基因Nta13g05820.1同为参与拟南芥叶近-远轴极性建成的REVOLUTA基因的同源基因,序列相似性表明Nta14g05160.1Nta13g05820.1分别来自普通烟草的2个二倍体祖先种绒毛状烟草和林烟草;突变发生在基因START结构域编码序列包含的小RNA miR165结合位点,提示突变可导致mRNA免于小RNA介导的降解,引起基因表达上升,最终产生功能获得型显性突变。

     

    Abstract: To understand the molecular mechanism underlying the establishment of leaf polarity, phenotypic analysis was performed on two long petiole mutants, M48 and M50, obtained by EMS (ethyl methanesulfonate) mutagenesis from tobacco (Nicotiana tabacum L.). Map-based cloning and comparative genomics strategies were used to isolate the mutant genes, followed by bioinformatic analysis of the candidate genes. The results showed that the long petioles of M48 and M50 were caused by the exposure of the leaf midvein, resulting from the degradation of the leaf blade from the base to the tip with different degrees. The mutant genes, Nta14g05160.1 and Nta13g05820.1, corresponding to M48 and M50, respectively, were identified as Arabidopsis REVOLUTA orthologs involved in the establishment of adaxial-abaxial polarity. Sequence similarity indicated that Nta14g05160.1 and Nta13g05820.1 originated from Nicotiana tomentosiformis and Nicotiana sylvestris, the diploid ancestors of Nicotiana tabacum L., respectively. The mutations occurred at the microRNA165 (miR165) binding site within the START domain coding sequence, suggesting that these mutations probably prevent microRNA-mediated degradation of mRNAs, resulting in increased gene transcript levels and ultimately the gain-of-function dominant mutant phenotypes.

     

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