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烤烟ζ-胡萝卜素脱氢酶基因的克隆与生物信息学分析

Cloning and Sequence Analysis of T-zds1 Gene from Flue-cured Tobacco

  • 摘要: 利用同源克隆和电子克隆方法,从烤烟栽培品种韭菜坪2号(Nicotiana tobacum cul.Jiucaiping2)中克隆获得烤烟ζ-胡萝卜素脱氢酶(zeta-carotene desaturase,ZDS)基因的全长cDNA序列(命名为T-zds1),并对其编码蛋白的一级、二级进行了预测。该基因在GenBank中的登录号为JF975566,全长为2312 bp,编码的蛋白含588个氨基酸,蛋白登录号AEG73891。BLASTp搜索结果及进化分析结果表明,烤烟T-zds1基因编码氨基酸序列与番茄、向日葵、胡萝卜ZDS基因编码氨基酸序列的相似性分别为97%,92%,90%。

     

    Abstract: Homology cloning and in silico cloning method were used to chlone the full length cDNA sequence of tobacco zeta-carotene dehydrogenase gene (named T-zds1)from flue-cured tobacco cultivar, Jiucaiping2, and the primary and secondary structures of its encoding protein were predicted. The GenBank accession number of T-zds1 was JF975566 with the full length of 2312 bp, the coding protein contained 588 amino acids and the protein accession number was AEG73891. The results of BLASTp and phylogenetic analysis showed that the similarities of encoding amino acid sequence of T-zds1 to that of tomato, sunflower and carrot were 97%, 92%, and 90%, respectively.

     

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