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烟草周期蛋白依赖性激酶基因NtCDK8的克隆及生物信息学分析

Cloning and Bioinformatics Analysis of Cyclin-dependent Protein Kinase Gene NtCDK8 from Nicotiana tabacum

  • 摘要: 为明确周期蛋白依赖性激酶(Cyclin-dependent protein kinases,CDKs)在烟草中的生物学功能,通过同源性搜索的方法获得了烟草周期蛋白依赖性激酶基因的EST序列。采用RT-PCR技术,从烟草栽培品种红花大金元中成功克隆出了周期蛋白依赖性激酶基因,并命名为NtCDK8NtCDK8基因cDNA编码区全长为1422 bp,编码473个氨基酸。氨基酸序列同源性比对分析表明:NtCDK8蛋白与番茄、马铃薯、拟南芥周期蛋白依赖性激酶的相似性分别达到93.02%,94.08%和75.32%。蛋白结构预测分析显示NtCDK8具有丝氨酸/苏氨酸(Serine/Threonine)蛋白激酶结构域,可能通过促使下游蛋白中的丝氨酸或苏氨酸残基磷酸化,进而促使细胞外信号向细胞内传递;通过疏水性、信号肽及亚细胞定位预测综合分析表明,NtCDK8蛋白可能是一个在细胞核中发挥功能的亲水性蛋白。

     

    Abstract: In order to explore the biological function of cyclin-dependent kinase (CDK) in Nicotiana tabacum, the EST sequence of CDK gene in tobacco were obtained by homology search. A CDK gene was cloned from cv. Honghuadajinyuan by RT-PCR and named as NtCDK8. The full length of cDNA encoding zone of NtCDK8 was 1422 bp, which encoded 473 amino acids. The results of amino acid sequence homology analysis indicated that the similarities of NtCDK8 protein with the CDK in Solanum lycopersicum, Solanum tuberosum and Arabidopsis thaliana were 93.02%, 94.08% and 75.32%, respectively. The prediction analysis of protein structure revealed that there was a Serine/Threonine protein kinase domain in NtCDK8 protein, the domain probably promoted the signal transferring from outside to inside of cells via furthering the phosphorylation of residues of serine or threonine in downstream proteins. The comprehensive prediction analysis of hydrophobicity, signal peptide and subcellular localization indicated that NtCDK8 protein might be a hydrophilic protein functioning in nucleus.

     

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